Vadim V. Gaponenko : rechercher sur Z-Library

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1

Photoreactive “Nanorulers” Detect a Novel Conformation of Full Length HDAC3-SMRT Complex in Solution

Abdelkarim, Hazem, Brunsteiner, Michael, Neelarapu, Raghupathi, Bai, He, Madriaga, Antonett, van Breemen, Richard B., Blond, Sylvie Y., Gaponenko, Vadim, Petukhov, Pavel A.

Journal:

ACS Chemical Biology

Année:

2013

Langue:

english

Fichier:

PDF, 2.61 MB

english, 2013

2

ROS inhibitor N -acetyl-L-cysteine antagonizes the activity of proteasome inhibitors

Halasi, Marianna, Wang, Ming, Chavan, Tanmay S., Gaponenko, Vadim, Hay, Nissim, Gartel, Andrei L.

Journal:

Biochemical Journal

Année:

2013

Langue:

english

Fichier:

PDF, 831 KB

english, 2013

3

Heteromerization of chemokine (C-X-C motif) receptor 4 with α 1A/B -adrenergic receptors controls α 1 -adrenergic receptor function

Tripathi, Abhishek, Vana, P. Geoff, Chavan, Tanmay S., Brueggemann, Lioubov I., Byron, Kenneth L., Tarasova, Nadya I., Volkman, Brian F., Gaponenko, Vadim, Majetschak, Matthias

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2015

4

NMR resonance assignment and structure prediction of the C-terminal domain of the microtubule end-binding protein 3

Abdelkarim, Hazem, Hitchinson, Ben, Qu, Xinyan, Banerjee, Avik, Komarova, Yulia A., Gaponenko, Vadim, Massiah, Michael

Journal:

Année:

2020

Fichier:

PDF, 2.18 MB

2020

5

Natural Products Attenuating Biosynthesis, Processing, and Activity of Ras Oncoproteins: State of the Art and Future Perspectives

Tisi, Renata, Gaponenko, Vadim, Vanoni, Marco, Sacco, Elena

Journal:

Année:

2020

Fichier:

PDF, 12.16 MB

2020

6

Peptide Structure Stabilization by Membrane Anchoring and its General Applicability to the Development of Potent Cell-Permeable Inhibitors

Liv Johannessen, Jarrett Remsberg, Prof. Vadim Gaponenko, Dr. Kristie M. Adams, Dr. Joseph J. Barchi Jr., Dr. Sergey G. Tarasov, Dr. Sheng Jiang, Dr. Nadya I. Tarasova

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 435 KB

english, 2011

7

First experimental identification of Ras-inhibitor binding interface using a water-soluble Ras ligand

Alessandro Palmioli, Elena Sacco, Sherwin Abraham, Celestine J. Thomas, Alessandro Di Domizio, Luca De Gioia, Vadim Gaponenko, Marco Vanoni, Francesco Peri

Journal:

Bioorganic & Medicinal Chemistry Letters

Année:

2009

Langue:

english

Fichier:

PDF, 1.77 MB

english, 2009

8

Efficient and precise measurement of Hα–Cα, Cα–C′, Cα–Cβand HN–N residual dipolar couplings from 2D HN–N correlation spectra

Robert L. McFeeters, C. Andrew Fowler, Vadim V. Gaponenko, R. Andrew Byrd

Journal:

Journal of Biomolecular NMR

Année:

2005

Langue:

english

Fichier:

PDF, 470 KB

english, 2005

9

1H–15N correlation spectroscopy of nanocrystalline proteins

Corey R. Morcombe, Eric K. Paulson, Vadim Gaponenko, R. Andrew Byrd, Kurt W. Zilm

Journal:

Journal of Biomolecular NMR

Année:

2005

Langue:

english

Fichier:

PDF, 758 KB

english, 2005

10

Detection of protein–ligand interactions by NMR using reductive methylation of lysine residues

Sherwin J. Abraham, Susanne Hoheisel, Vadim Gaponenko

Journal:

Journal of Biomolecular NMR

Année:

2008

Langue:

english

Fichier:

PDF, 231 KB

english, 2008

11

Differences in lysine pKa values may be used to improve NMR signal dispersion in reductively methylated proteins

Sherwin J. Abraham, Tomoyoshi Kobayashi, R. John Solaro, Vadim Gaponenko

Journal:

Journal of Biomolecular NMR

Année:

2009

Langue:

english

Fichier:

PDF, 277 KB

english, 2009

12

Breaking symmetry in the structure determination of (large) symmetric protein dimers

Vadim Gaponenko, Amanda S. Altieri, Jess Li, R. Andrew Byrd

Journal:

Journal of Biomolecular NMR

Année:

2002

Langue:

english

Fichier:

PDF, 180 KB

english, 2002

13

Improving the Accuracy of NMR Structures of Large Proteins Using Pseudocontact Shifts as Long-Range Restraints

Vadim Gaponenko, Siddhartha P. Sarma, Amanda S. Altieri, David A. Horita, Jess Li, R. Andrew Byrd

Journal:

Journal of Biomolecular NMR

Année:

2004

Langue:

english

Fichier:

PDF, 296 KB

english, 2004

14

Protein global fold determination using site-directed spin and isotope labeling

Vadim Gaponenko, Jack W. Howarth, Genevieve Gasmi-Seabrook, Jie Yuan, Linda Columbus, Wayne L. Hubbell, Paul R. Rosevear

Journal:

Protein Science

Année:

2000

Langue:

english

Fichier:

PDF, 1.52 MB

english, 2000

15

Expression, purification, and characterization of soluble K-Ras4B for structural analysis

Sherwin J. Abraham, Ismaeel Muhamed, Ryan Nolet, Fung Yeung, Vadim Gaponenko

Journal:

Protein Expression and Purification

Année:

2010

Langue:

english

Fichier:

PDF, 472 KB

english, 2010

16

Cardiac troponin I inhibitory peptide: location of interaction sites on troponin C

M.Bret Abbott, Alex Dvoretsky, Vadim Gaponenko, Paul R Rosevear

Journal:

Année:

2000

Langue:

english

Fichier:

PDF, 229 KB

english, 2000

17

Derivation of structural restraints using a thiol-reactive chelator

Alex Dvoretsky, Vadim Gaponenko, Paul R Rosevear

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 153 KB

english, 2002

18

NMR analysis of cardiac troponin C-troponin I complexes: effects of phosphorylation

Natosha Finley, M.Bret Abbott, Ekram Abusamhadneh, Vadim Gaponenko, Wen-ji Dong, G. Gasmi-Seabrook, Jack W. Howarth, Mark Rance, R.John Solaro, Herbert C. Cheung, Paul R. Rosevear

Journal:

Année:

1999

Langue:

english

Fichier:

PDF, 301 KB

english, 1999

19

Rationally Designed Inhibitors Identify STAT3 N-Domain as a Promising Anticancer Drug Target

Timofeeva, Olga A., Gaponenko, Vadim, Lockett, Stephen J., Tarasov, Sergey G., Jiang, Sheng, Michejda, Christopher J., Perantoni, Alan O., Tarasova, Nadya I.

Journal:

ACS Chemical Biology

Année:

2007

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2007

20

Altered Flexibility affects Regulatory Functions of Cardiac α-Tropomyosin (α-Tm) in a Novel Transgenic Mouse Model Expressing α-Tm-D137L

Yar, Sumeyye, Chowdhury, Shamim A., Turner, Matthew, Rajan, Sudarsan, Wolska, Beata M., Gaponenko, Vadim, Debold, Edward P., Kobayashi, Tomoyoshi, Wieczorek, David F., Solaro, R. John

Journal:

Biophysical Journal

Année:

2013

Langue:

english

Fichier:

PDF, 42 KB

english, 2013

21

Diluting Abundant Spins by Isotope Edited Radio Frequency Field Assisted Diffusion

Morcombe, Corey R., Gaponenko, Vadim, Byrd, R. Andrew, Zilm, Kurt W.

Journal:

Journal of the American Chemical Society

Année:

2004

Langue:

english

Fichier:

PDF, 101 KB

english, 2004

22

Calculation of z -Coordinates and Orientational Restraints Using a Metal Binding Tag †

Gaponenko, Vadim, Dvoretsky, Alex, Walsby, Charles, Hoffman, Brian M., Rosevear, Paul R.

Journal:

Année:

2000

Langue:

english

Fichier:

PDF, 91 KB

english, 2000

23

High-Sensitivity Observation of Dipolar Exchange and NOEs between Exchangeable Protons in Proteins by 3D Solid-State NMR Spectroscopy

Paulson, Eric K., Morcombe, Corey R., Gaponenko, Vadim, Dancheck, Barbara, Byrd, R. Andrew, Zilm, Kurt W.

Journal:

Journal of the American Chemical Society

Année:

2003

Langue:

english

Fichier:

PDF, 97 KB

english, 2003

24

The Hypervariable Region of K-Ras4B Is Responsible for Its Specific Interactions with Calmodulin

Abraham, Sherwin J., Nolet, Ryan P., Calvert, Richard J., Anderson, Lucy M., Gaponenko, Vadim

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 4.38 MB

english, 2009

25

13 C CPMAS Spectroscopy of Deuterated Proteins: CP Dynamics, Line Shapes, and T 1 Relaxation

Morcombe, Corey R., Gaponenko, Vadim, Byrd, R. Andrew, Zilm, Kurt W.

Journal:

Journal of the American Chemical Society

Année:

2005

Langue:

english

Fichier:

PDF, 174 KB

english, 2005

26

Solution Structures of the C-Terminal Domain of Cardiac Troponin C Free and Bound to the N-Terminal Domain of Cardiac Troponin I

Gasmi-Seabrook, Geneviève M. C., Howarth, Jack W., Finley, Natosha, Abusamhadneh, Ekram, Gaponenko, Vadim, Brito, Rui M. M., Solaro, R. John, Rosevear, Paul R.

Journal:

Année:

1999

Fichier:

PDF, 13 KB

1999

27

Solution Structures of the C-Terminal Domain of Cardiac Troponin C Free and Bound to the N-Terminal Domain of Cardiac Troponin I †,‡

Gasmi-Seabrook, Geneviève M. C., Howarth, Jack W., Finley, Natosha, Abusamhadneh, Ekram, Gaponenko, Vadim, Brito, Rui M. M., Solaro, R. John, Rosevear, Paul R.

Journal:

Année:

1999

Langue:

english

Fichier:

PDF, 282 KB

english, 1999

28

Binding properties and biological characterization of new sugar-derived Ras ligands

Sacco, Elena, Abraham, Sherwin J., Palmioli, Alessandro, Damore, Gaetana, Bargna, Anna, Mazzoleni, Elisa, Gaponenko, Vadim, Vanoni, Marco, Peri, Francesco

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 469 KB

english, 2011

29

Mechanisms of Membrane Binding of Small GTPase K-Ras4B Farnesylated Hypervariable Region

Jang, Hyunbum, Abraham, Sherwin J., Chavan, Tanmay S., Hitchinson, Ben, Khavrutskii, Lyuba, Tarasova, Nadya I., Nussinov, Ruth, Gaponenko, Vadim

Journal:

Journal of Biological Chemistry

Année:

2015

Langue:

english

Fichier:

PDF, 4.29 MB

english, 2015

30

Elucidating the Functional Significance of the C-Terminal Hypervariable Region (HVR) in K-Ras4A

Chakrabarti, Mayukh, Lu, Shaoyong, Jang, Hyunbum, Khavrutskii, Lyuba, Tarasova, Nadya I., Gaponenko, Vadim, Nussinov, Ruth

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 63 KB

english, 2015

31

The structure of monomeric components of self-assembling CXCR4 antagonists determines the architecture of resulting nanostructures

Lee, Youngshim, Chen, Yuhong, Tarasova, Nadya I, Gaponenko, Vadim

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.18 MB

english, 2011

32

Development of a Novel Peptide Nanoparticle Inhibitor for Human CCR3/Eotaxin-Mediated Eosinophil Migration

Laffey, Kimberly G., Garnier, Boris, Hitchinson, Ben, Tarasova, Nadya, Gaponenko, Vadim, Ackerman, Steven J.

Journal:

Journal of Allergy and Clinical Immunology

Année:

2015

Langue:

english

Fichier:

PDF, 39 KB

english, 2015

33

Structural plasticity of a transmembrane peptide allows self-assembly into biologically active nanoparticles

Sergey G. Tarasov, Vadim Gaponenko, O. M. Zack Howard, Yuhong Chen, Joost J. Oppenheim, Marzena A. Dyba, Sriram Subramaniam, Youngshim Lee, Christopher Michejda and Nadya I. Tarasova

Journal:

Proceedings of the National Academy of Sciences

Année:

2011

Langue:

english

Fichier:

PDF, 1.41 MB

english, 2011

34

GTP Binding and Oncogenic Mutations May Attenuate Hypervariable Region (HVR)-Catalytic Domain Interactions in Small GTPase K-Ras4B, Exposing the Effector Binding Site

Lu, Shaoyong, Banerjee, Avik, Jang, Hyunbum, Zhang, Jian, Gaponenko, Vadim, Nussinov, Ruth

Journal:

Journal of Biological Chemistry

Année:

2015

Langue:

english

Fichier:

PDF, 5.39 MB

english, 2015

35

The disordered hypervariable region and the folded catalytic domain of oncogenic K-Ras4B partner in phospholipid binding

Banerjee, Avik, Jang, Hyunbum, Nussinov, Ruth, Gaponenko, Vadim

Journal:

Current Opinion in Structural Biology

Année:

2016

Langue:

english

Fichier:

PDF, 1.86 MB

english, 2016

36

High-Affinity Interaction of the K-Ras4B Hypervariable Region with the Ras Active Site

Chavan, Tanmay S., Jang, Hyunbum, Khavrutskii, Lyuba, Abraham, Sherwin J., Banerjee, Avik, Freed, Benjamin C., Johannessen, Liv, Tarasov, Sergey G., Gaponenko, Vadim, Nussinov, Ruth, Tarasova, Nadya I

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 2.78 MB

english, 2015

37

Commercially available antibodies directed against α-adrenergic receptor subtypes and other G protein-coupled receptors with acceptable selectivity in flow cytometry experiments

Tripathi, Abhishek, Gaponenko, Vadim, Majetschak, Matthias

Journal:

Naunyn-Schmiedeberg's Archives of Pharmacology

Année:

2016

Langue:

english

Fichier:

PDF, 745 KB

english, 2016

38

Sensitive High Resolution Inverse Detection NMR Spectroscopy of Proteins in the Solid State

Paulson, Eric K., Morcombe, Corey R., Gaponenko, Vadim, Dancheck, Barbara, Byrd, R. Andrew, Zilm, Kurt W.

Journal:

Journal of the American Chemical Society

Année:

2003

Langue:

english

Fichier:

PDF, 117 KB

english, 2003

39

Plasma membrane regulates Ras signaling networks

Chavan, Tanmay Sanjeev, Muratcioglu, Serena, Marszalek, Richard, Jang, Hyunbum, Keskin, Ozlem, Gursoy, Attila, Nussinov, Ruth, Gaponenko, Vadim

Journal:

Cellular Logistics

Année:

2015

Langue:

english

Fichier:

PDF, 1.39 MB

english, 2015

40

Nucleotide-Dependent Membrane Interaction and Dimerization of K-Ras4B

Jang, Hyunbum, Lu, Shaoyong, Chakrabarti, Mayukh, Khavrutskii, Lyuba, Tarasova, Nadya I., Gaponenko, Vadim, Nussinov, Ruth

Journal:

Biophysical Journal

Année:

2015

Langue:

english

Fichier:

PDF, 59 KB

english, 2015

41

SPIE Proceedings [SPIE SPIE Proceedings - (Sunday 12 February 2012)] - Layer-by-layer laser spectral microanalysis of art painting

Kozhukh, N. M., Klyachkovskaya, E. V., Rozantsev, V. A., Ershov-Pavlov, E. A., Gaponenko, S. V., Konov, Vitaly I., Panchenko, Vladislav Y., Sugioka, Koji, Veiko, Vadim P.

Année:

2012

Langue:

english

Fichier:

PDF, 327 KB

english, 2012

42

Calmodulin and PI3K Signaling in KRAS Cancers

Nussinov, Ruth, Wang, Guanqiao, Tsai, Chung-Jung, Jang, Hyunbum, Lu, Shaoyong, Banerjee, Avik, Zhang, Jian, Gaponenko, Vadim

Journal:

Trends in Cancer

Année:

2017

Langue:

english

Fichier:

PDF, 2.82 MB

english, 2017

43

A novel biased antagonist of the eotaxin-CCR3 pathway in eosinophils

Grozdanovic, Milica M., Rousslang, Lee K., Abdelkarim, Hazem, Laffey, Kimberly G., Hitchinson, Ben, Tarasova, Nadya, Gaponenko, Vadim, Ackerman, Steven J.

Journal:

Journal of Allergy and Clinical Immunology

Année:

2017

Langue:

english

Fichier:

PDF, 123 KB

english, 2017

44

Functional and structural consequences of chemokine (C-X-C motif) receptor 4 activation with cognate and non-cognate agonists

Eby, Jonathan M., Abdelkarim, Hazem, Albee, Lauren J., Tripathi, Abhishek, Gao, Xianlong, Volkman, Brian F., Gaponenko, Vadim, Majetschak, Matthias

Journal:

Molecular and Cellular Biochemistry

Année:

2017

Langue:

english

Fichier:

PDF, 1.16 MB

english, 2017

45

Flexible-Body Motions of Calmodulin and the Farnesylated Hypervariable Region Yield a High-Affinity Interaction Enabling K-Ras4B Membrane Extraction

Jang, Hyunbum, Banerjee, Avik, Chavan, Tanmay, Gaponenko, Vadim, Nussinov, Ruth

Journal:

Journal of Biological Chemistry

Année:

2017

Langue:

english

Fichier:

PDF, 4.25 MB

english, 2017

46

α 1 ‐Adrenergic Receptors Function Within Hetero‐Oligomeric Complexes With Atypical Chemokine Receptor 3 and Chemokine (C‐X‐C motif) Receptor 4 in Vascular Smooth Muscle Cells

Albee, Lauren J., Eby, Jonathan M., Tripathi, Abhishek, LaPorte, Heather M., Gao, Xianlong, Volkman, Brian F., Gaponenko, Vadim, Majetschak, Matthias

Journal:

Journal of the American Heart Association

Année:

2017

Langue:

english

Fichier:

PDF, 2.81 MB

english, 2017

47

Phosphorylated Calmodulin Promotes PI3K Activation by Binding to the SH 2 Domains

Zhang, Mingzhen, Jang, Hyunbum, Gaponenko, Vadim, Nussinov, Ruth

Journal:

Biophysical Journal

Année:

2017

Langue:

english

Fichier:

PDF, 3.20 MB

english, 2017

48

Identification and functional characterization of arginine vasopressin receptor 1A : atypical chemokine receptor 3 heteromers in vascular smooth muscle

Albee, Lauren J., LaPorte, Heather M., Gao, Xianlong, Eby, Jonathan M., Cheng, You-Hong, Nevins, Amanda M., Volkman, Brian F., Gaponenko, Vadim, Majetschak, Matthias

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.95 MB

english, 2018

49

Honokiol is a FOXM1 antagonist

Halasi, Marianna, Hitchinson, Ben, Shah, Binal N., Váraljai, Renáta, Khan, Irum, Benevolenskaya, Elizaveta V., Gaponenko, Vadim, Arbiser, Jack L., Gartel, Andrei L.

Journal:

Cell Death and Disease

Année:

2018

Langue:

english

Fichier:

PDF, 1.09 MB

english, 2018

50

Asymmetrical ligand-induced cross-regulation of chemokine (C-X-C motif) receptor 4 by α1-adrenergic receptors at the heteromeric receptor complex

Gao, Xianlong, Albee, Lauren J., Volkman, Brian F., Gaponenko, Vadim, Majetschak, Matthias

Journal:

Scientific Reports

Année:

2018

Langue:

english

Fichier:

PDF, 3.86 MB

english, 2018